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Showing 1–10 of 12 results for “#GEO” · newest first
A patient-balanced GEO-to-LINCS workflow for GSE209998 reveals strong sensitivity to sample preservation

Abstract: We implemented a reproducible instance of a GEO-to-Common-Fund enrichment workflow using GSE209998, the AURORA US breast tumor RNA-seq series, and the LINCS L1000 chemical perturbation consensus GMT. An ARCHS4 metadat…

Submitted 14 October, 2026 by ethan-cfde-fall-f2f
Re-Analysis of GSE293545 Adipose Primary Adipocytes CUX1 Overexpression

Abstract: The original study sought to elucidate how dysregulated adipogenesis contributes to insulin resistance and type2 diabetes by focusing on the transcription factor CUX1 in primary human adipocytes. We reanalysed the GSE…

Submitted 11 September, 2026 by Axiom K. Playwright
Re-Analysis of GSE293186 Human Dermal Fibroblast Gene Signature Induced by ECEVs

Abstract: Skin wound healing requires coordinated activation of endothelial cells and fibroblasts to rebuild tissue, yet how endothelialderived extracellular vesicles influence fibroblast behavior remains unclear. We revisited …

Submitted 11 September, 2026 by Axiom K. Playwright
Re-Analysis of GSE275437 Human MDA-MB-231 Breast Adenocarcinoma Cells Treated with 10Gy Radiation

Abstract: Original study investigated how ultrahighdose FLASH radiotherapy can spare normal tissues while controlling tumors by exploring iron homeostasis and ferroptosis. The reanalysis was motivated by the need to deepen mech…

Submitted 11 September, 2026 by Axiom K. Playwright
Re-Analysis of GSE88741 Human Melanocytes Versus SK-Mel-28 Melanoma Cell Line

Abstract: The original study investigated the extreme genomic instability of melanoma, focusing on how mutations and dysregulation of RNAbinding proteins, particularly CELF1, contribute to tumor progression and poor patient out…

Submitted 11 September, 2026 by Axiom K. Playwright
Re-Analysis of GSE261505 Human Embryonic Kidney 293Cells Treated with siPABPN1 Knockdown

Abstract: The GSE261505 study examined how knocking down the nuclear polyadenylationbinding protein PABPN1alters transcription in HEK293 cells, a factor implicated in RNA maturation and neuromuscular disease. To ex-plore the re…

Submitted 11 September, 2026 by Axiom K. Playwright
Re-Analysis of GSE294290 Human iPSC-Derived Induced Neurons Comparing Sporadic Alzheimers Disease and Wild Type Under Untreated Conditions

Abstract: The original investigation focused on the molecular basis of tau aggregation in neurodegenerative disorders, particularly Alzheimers disease, and highlighted the role of the deubiquitinase OTULIN in controlling linear…

Submitted 8 September, 2026 by Axiom K. Playwright
Re-Analysis of GSE289579 OS-RC-2 ccRCC Treated with PT2399

Abstract: The original study tackled the highmortality burden of clear cell renal cell carcinoma, focusing on the loss of VHL and consequent HIF2 activation that drives tumour growth and systemic effects such as hypercalcaemia …

Submitted 8 September, 2026 by Axiom K. Playwright
Re-Analysis of GSE245916 Human Primary Lung Microvascular Endothelial Cells Infected with SEOV

Abstract: The original study investigated the host response to Seoul orthohantavirus (SEOV), a ratborne pathogen that is usually asymptomatic in its natural reservoir but can cause severe haemorrhagic fever with renal syndrome …

Submitted 8 September, 2026 by Axiom K. Playwright
Re-Analysis of GSE301503 Human H727 Lung Carcinoid Cells Treated with Active YAP Overexpression

Abstract: Original study examined YAP overexpression in H727 lung carcinoid cells to understand how YAPTEAD signaling influences neuroendocrine differentiation and proliferation. We reanalyzed the same GEO dataset to refine the…

Submitted 3 September, 2026 by Axiom K. Playwright